| Site # | Site Name | Value |
| 43 | LIBBY RES Inflow | 92 |
| 44 | LIMA RESERVOIR Inflow | 71 |
| 45 | LITTLE BIGHORN RIVER nr Hardin | 47 |
| 46 | LITTLE BLACKFOOT nr Garrison | 54 |
| 47 | LOWER WILLOW CK RES Inflow | 67 |
| 48 | MARIAS RIVER nr Shelby | 53 |
| 50 | MF ROCK CREEK nr Philipsburg | 76 |
| 52 | MILK RIVER at East Cross. | 47 |
| 53 | MILK RIVER at Western Crossing | 42 |
| 54 | MISSOURI RIVER at Fort Benton | 53 |
| 55 | MISSOURI RIVER at Toston | 62 |
| 56 | MISSOURI RIVER at Virgelle | 51 |
| 57 | MISSOURI RIVER below Fort Peck | 51 |
| 58 | MISSOURI RIVER nr Landusky | 52 |
| 59 | MUSSELSHELL at Harlowton | 38 |
| 60 | MYSTIC LAKE Reservoir Inflow | 80 |
| 61 | NEVADA CREEK nr Finn | 58 |
| 63 | NF MUSSELSHELL nr Delpine | 52 |
| 64 | POWDER RIVER at Moorehead | 32 |
| 65 | POWDER RIVER near Locate | 30 |
| 66 | PRICKLY PEAR CREEK nr Clancy | 68 |
| 67 | PROSPECT CREEK at Thompson Falls | 63 |
| 68 | ROCK CREEK nr Clinton | 68 |
| 69 | RUBY RIVER Reservoir Inflow | 66 |
| 70 | SF MUSSELSHELL abv Martinsdale | 52 |
| 71 | SHEEP CREEK nr White Sulphur Spgs. | 64 |
| 72 | SHIELDS RIVER nr Livingston | 39 |
| 73 | SKALKAHO CK nr Hamilton | 76 |
| 74 | SMITH RIVER abv Eagle Creek | 66 |
| 75 | ST. MARY RIVER at US/CAN Border | 66 |
| 76 | ST. MARY RIVER nr Babb | 68 |
| 78 | STILLWATER RIVER nr Absarokee | 64 |
| 79 | SWAN RIVER nr Bigfork | 76 |
| 80 | SWIFT RESERVOIR Inflow | 63 |
| 81 | TETON nr Dutton | 20 |
| 82 | THOMPSON nr Thompson Falls | 56 |
| 84 | TONGUE RIVER RESERVOIR Inflow | 48 |
| 85 | TWO MEDICINE RIVER nr Browning | 68 |
| 87 | WF BITTERROOT nr Conner | 76 |
| 89 | WILLOW CREEK Reservoir Inflow | 64 |
| 90 | YAAK RIVER nr Troy | 82 |